NOTE:
This page has been moved to the ARS website. For the current version, go to
https://www.ars.usda.gov/northeast-area/beltsville-md-barc/beltsville-agricultural-research-center/agil/aip/software/aip-software/
AIP software
Packages |
Licenses
Packages
BESTPRED – A set of programs for
best prediction of lactation yields (contact: John Cole)
ConvertCufflinksToExcel – A program to convert Cufflinks output files into easily readable Microsoft Excel tables using Apache's POI library (only "cuffdiff" output format currently supported; contact: Derek Bickhart)
FINDHAP – A program to find
haplotypes and impute genotypes from multiple marker sets and sequence data (contact: Paul VanRaden)
FINDMAP – A program to align sequence reads to reference map, call previous variants, and identify new variants (contact: Paul VanRaden)
GENOSIM – A set of programs to simulate genotypes, breeding values, phenotypes, and DNA sequence read depth and to resolve SNP conflicts between parent and offspring genotypes (contact: Paul VanRaden)
MTDFREML –
A set of programs for estimation of genetic (co)variances using multiple-trait
derivative-free restricted maximum likelihood (contact: Curt Van Tassell)
MTGSAM – A
multiple-trait Gibbs sampler for animal models (contact: Curt Van Tassell)
Licenses
All AIP software is in the public domain and may be modified and redistributed at will.
Last Modified: 07/22/2021