Scientific journal articles
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Articles from the Journal of Dairy Science are
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Dairy Science (copyright, the
American Dairy Science
Association).
2022
- Al-Khudhair, A., Null, D.J., Wolfe, C.W., Cole, J.B., Steffen, D.J., and VanRaden, P.M. Inheritance of a mutation causing neuropathy with splayed forelimbs in Jersey cattle. J. Dairy Sci. 105(2):1338-1345. 2022. | Abstract
- Khanal, P., Parker Gaddis, K.L., Vandehaar, M., Weigel, K., White, H., Penagaricano, F., Koltes, J., Santos, J., Baldwin, R.L., Buchard, J., Durr, J., and Templeton, R. Multiple-trait random regression modeling of feed efficiency in US Holsteins. J. Dairy Sci. 105(7):5954–5971. 2022. | Abstract
- Wu, X.-L., Wiggans, G.R., Norman, H.D., Miles, A.M., Van Tassell, C.P., Baldwin, R.L., VanRaden, P.M., Burchard, J., and Durr, J. Statistical methods revisited for estimating daily milk yields: how well do they work? Front. Genet. 13:943705. 2022. | Abstract
2021
- Cesarani, A., Masuda, Y., Tsuruta, S., Nicolazzi, E.L., VanRaden, P.M., Lourenco, D., and Misztal, I. Genomic predictions for yield traits in US
Holsteins with unknown parent groups. J. Dairy Sci. 104(5):5843–5853. 2021. | Abstract
- Houlahan, K., Schenkel, F.S., Hailemariam, D., Lassen, J., Kargo, M., Cole, J.B., Connor, E.E., Wegmann, S., Junior, O., Miglior, F., Fleming, A., Chud, T.C.S., and Baes, C.F. Effects of incorporating dry matter intake and residual feed intake into a selection index for dairy cattle using deterministic modeling. Animals 11(4):1157. 2021. | Abstract
- Lozada-Soto, E.A., Maltecca, C., Lu, D., Miller, S., Cole, J.B., and Tiezzi, F. Trends in genetic diversity and the effect of inbreeding in American Angus cattle under genomic selection. Genet. Sel. Evol. 53:50. 2021. | Abstract
- Mueller, M.L., Cole, J.B., Connors, N.K., Johnston, D.J., Randhawa, I.A.S., and Van Eenennaam, A.L. Comparison of gene editing versus conventional breeding to introgress the POLLED allele into the tropically adapted Australian beef cattle
population. Front. Genet. 12:593154. 2021. | Abstract
- Sumreddee, P., Hay, E.H., Toghiani, S., Roberts, A., Aggrey, S.E., and Rekaya, R. Grid search approach to discriminate between old and recent inbreeding using phenotypic, pedigree and genomic information. BMC Genomics 22:538. 2021. | Abstract
- Wu, X.-L., Parker Gaddis, K.L., Burchard, J., Norman, H.D., Nicolazzi, E., Connor, E.E., Cole, J.B., and Durr, J. An alternative interpretation of residual feed intake by phenotypic recursive relationships in dairy cattle. JDS Commun. 2(6):371-375. 2021. | Abstract
2020
- Freebern, E., Santos, D.J.A., Fang, L., Jiang, J., Parker Gaddis, K.L., Liu, G.E., VanRaden, P.M., Maltecca, C., Cole, J.B., and Ma, L. GWAS and fine-mapping of livability and six diseases traits in Holstein cattle. BMC Genomics 21:41. 2020. | Abstract
- Li, B., VanRaden, P.M., Guduk, E., O'Connell, J.R., Null, D.J., Connor, E.E., VandeHaar, M.J., Tempelman, R.J., Weigel, K.A., and Cole, J.B. Genomic prediction of residual feed intake in US Holstein dairy cattle. J. Dairy Sci. 103(3):2477–2486. 2020. | Abstract
- McWhorter, T.M., Hutchison, J.L., Norman, H.D., Cole, J.B., Fok, G.C., Lourenco, D.A.L., and VanRaden, P.M. Investigating conception rate for beef service sires bred to dairy cows and heifers. J. Dairy Sci. 103(11):10374–10382. 2020. | Abstract
- Parker Gaddis, K.L., VanRaden, P.M., Cole, J.B., Norman, H.D., Nicolazzi, E., and Dürr, J.W. Symposium review: Development, implementation, and perspectives
of health evaluations in the United States J. Dairy Sci. 103(6):5354–5365. 2020. | Abstract
- Rosen, B.D., Bickhart, D.M., Schnabel, R.D., Koren, S., Elsik, C.G., Tseng, E., Rowan, T.N., Low, W.Y., Zimin, A., Couldrey, C., Hall, R., Li, W., Rhie, A., Ghurye, J., McKay, S.D., Thibaud-Nissen, F., Hoffman, J., Murdoch, B.M., Snelling, W.M., McDaneld, T.G., Hammond, J.A., Schwartz, J.C., Nandolo, W., Hagen, D.E., Dreischer, C., Schultheiss, S.J., Schroeder, S.G., Cole, J.B., Van Tassell, C.P., Liu, G., Smith, T.P.L., Medrano, J.F. De novo assembly of the cattle reference genome with single-molecule sequencing. GigaScience 9(3):1–9. 2020. | Abstract
- Sumreddee, P., Toghiani, S., Hay, E.H., Roberts, A., Aggrey, S.E., and Rekaya, R. Runs of homozygosity and analysis of inbreeding depression. J. Anim. Sci. 98(12):1–11. 2020. | Abstract
- VanRaden, P.M., Tooker, M.E., Chud, T.C.S., Norman, H.D., Megonigal, Jr., J.H., Haagen, I.W., and Wiggans, G.R. Genomic predictions for crossbred dairy cattle. J. Dairy Sci. 103(2):1620–1631. 2020. | Abstract
2019
- Fang, L., Cai, W., Liu, S., Canela-Xandri, O., Gao, Y., Jiang, J., Rawlik, K., Li, B., Schroeder, S.G., Rosen, B.D., Li, C.-J., Sonstegard, T.S., Alexander, L.J., Van Tassell, C.P., VanRaden, P.M., Cole, J.B., Yu, Y., Zhang, S., Tenesa, A., Ma, L., Liu, G.E. Comprehensive analyses of 723 transcriptomes enhance biological interpretation and genomic prediction for complex traits in cattle. Genome Research. 30(5):790–801. 2019. | Abstract
- Fang, L., Jiang, J., Li, B., Zhou, Y., Freebern, E., VanRaden, P.M., Cole, J.B., Liu, G.E., and Li, M. Genetic and epigenetic architecture of paternal origin contribute to gestation length in cattle. Communications Biol. 2:100. 2019. | Abstract
- Fang, L., Zhou, Y., Liu, S., Jiang, J., Bickhart, D.M., Null, D.J., Li, B., Schroeder, S.G., Rosen, B.D., Cole, J.B., Van Tassell, C.P., Ma, L., and Liu, G. Comparative analyses of sperm DNA methylomes among human, mouse and cattle provide insights into epigenomic evolution and complex traits. Epigenetics. 14(3):260–276. 2019. | Abstract
- Fang, L., Zhou, Y., Liu, S., Jiang, J., Bickhart, D.M., Null, D.J., Li, B., Schroeder, S.G., Rosen, B.D., Cole, J.B., Van Tassell, C.P., Ma, L., and Liu, G. Integrating signals from sperm methylome analysis and genome-wide association study for a better understanding of male fertility in cattle. Epigenomes. 3(2):10. 2019. | Abstract
- Guarini, A., Sargolzaei, M., Brito, L., Kroezen, V., Lourenco, D., Baes, C., Miglior, F., Cole, J.B., and Schenkel, F. Estimating the effect of the deleterious recessive haplotypes AH1 and AH2 on reproduction performance of Ayrshire cattle. J. Dairy Sci. 102(6):5315–5322. 2019. | Abstract
- Jiang, J., Cole, J.B., Freebern, E., Da, Y., VanRaden, P.M., and Ma, L. Functional annotation and Bayesian fine-mapping reveals candidate genes for important agronomic traits in Holstein bulls. Comms. Bio. 2:212. 2019. | Abstract
- Jiang, J., Ma, L., Prakapenka, D., VanRaden, P.M., Cole, J.B., and Da, Y. A large-scale genome-wide association study in U.S. Holstein cattle. Front. Genet. 10:412. 2019. | Abstract
- Koltes, J.E., Cole, J.B., Clemmens, R., Dilger, R.N., Kramer, L.M., Lunney, J.K., McCue, M.E., McKay, S., Mateescu, R., Murdoch, B.M., Reuter, R., Rexroad, C., Rosa, G.J., Serao, N.V., White, S.N., Woodward-Greene, M.J., Worku, M., Zhang, H., and Reecy, J. A vision for development and utilization of high-throughput phenotyping and big data analytics in livestock. Front. Genet. 10:1197. 2019. | Abstract
- Li, B., Fang, L., Null, D.J., Hutchison, J.L., Connor, E.E., VanRaden, P.M., and Cole, J.B. High-density genome-wide association study for residual feed intake in Holstein dairy cattle. J. Dairy Sci. 102(12):11067–11080. 2019. | AbstractLiu, S., Fang, L., Zhou, Y., Santos, D.J.A., Xiang, R., Daetwyler, H.D., Chamberlain, A.J., Cole, J.B., Li, C.-J., Yu, Y., Ma, L., Zhang, S., Liu, G.E. . BMC Genomics. 20:181. 2019. | Abstract
- Liu, M., Fang, L., Liu, S., Pan, M.G., Seroussi, E., Cole, J.B., Ma, L., Chen, H., and Liu, G. Analyses of inter-individual variations in sperm DNA methylation reveal their regulatory role in gene expression and association with reproduction traits in cattle. BMC Genomics. 20:888. 2019. | Abstract
- lung, L.H.S., Petrini, J., Ramirez-Diaz, J., Salvian, M., Rovadoscki, G.A., Pilonetto, F., Dauria, D.B., Machado, P.F., Coutinho, L.L., Wiggans, G.R., and Mourao, G.B. Genome-wide association study for milk production traits in a Brazilian Holstein population. J. Dairy Sci. 102(6):5305–5314. 2019. | Abstract
- Ma, L., Sonstegard, T.S., Cole, J.B., Van Tassell, C.P., Wiggans, G.R., Crooker, B.A., Tan, C., Prakapenka, D., Liu, G.E., and Da, Y. Genome changes due to artificial selection in U.S. Holstein cattle. BMC Genomics 20:128. 2019. | Abstract
- Santos, D.J., Cole, J.B., Lawlor, T.J., VanRaden, P.V., Tonhati, H., and Ma, L. Variance of gametic diversity and its use in selection programs. J. Dairy Sci. 102(6):5279–5294. 2019. | Abstract
2018
- Heringstad, B., Egger-Danner, C., Charfeddine, N., Pryce, J.E., Stock, K.F., Kofler, J., Sogstad, A.M., Holzhauer, M., Fiedler, A., Müller, K., Nielsen, P., Thomas, G., Gengler, N., de Jong, G., Ødegård, C., Malchiodi, F., Miglior, F., Alsaaod, M., and Cole, J.B. Invited review: Genetics and claw health: Opportunities to enhance claw health by genetic selection. J. Dairy Sci. 101:(6)4801–4821. 2018. | Abstract
- Porto-Neto, L.R., Bickhart, D.M., Landaeta-Hernandez, A.J., Utsunomiya, Y.T., Pagan, M., Jimenez, E., Hansen, P.J., Dikmen, S., Schroeder, S.G., Kim, E.-S., Sun, J., Crespo, E., Amati, N., Cole, J.B., Null, D.J., García, J.F., Reverter, A., Barendse, W., and Sonstegard, T.S. Convergent evolution of slick coat in cattle through truncation mutations in the prolactin receptor. Front. Genet. 9:57. 2018. | Abstract
- Weller, J.I., Bickhart, D.M., Wiggans, G.R., Tooker, M.E., O’Connell, J.R., Jiang, J., Ron, M., and VanRaden, P.M. Determination of quantitative trait nucleotides by concordance analysis
between quantitative trait loci and marker genotypes of US Holsteins. J. Dairy Sci. 101(10):9089–9107. 2018. | Abstract
- Zhou, Y., Shen, B., Jiang, J., Padhi, A., Park, K.-E., Oswalt, A., Sattler, C.G., Telugu, B.P., Chen, H., Cole, J.B., Liu, G.E., and Ma, L. Construction of PRDM9 allele-specific recombination maps in cattle using large-scale pedigree analysis and genome-wide single sperm genomics. DNA Res. 25(2):183–194. 2018. | Abstract
2017
- Jenko, J., Wiggans, G.R., Cooper, T.A., Eaglen, S.A.E., Luff, W.G. de L., Bichard, M., Pong-Wong, R., and Woolliams, J.A. Cow genotyping strategies for genomic selection in a small dairy cattle population. J. Dairy Sci. 100(1):439–452. 2017. | Abstract
- Jiang, J., Shen, B., O’Connell, J.R., VanRaden, P.M., Cole, J.B., and Ma, L. Dissection of additive, dominance, and imprinting effects for production and reproduction traits in Holstein cattle. BMC Genomics 18:425. 2017. | Abstract
- Oliveira Júnior, G.A., Chud, T.C.S., Ventura, R.V., Garrick, D.J., Cole, J.B., Munari, D.P., Ferraz, J.B.S., Mullart, E., DeNise, S., Smith, S., and da Silva, M.V.G.B. Genotype imputation in a tropical crossbred dairy cattle population. J. Dairy Sci. 100(12):9623–9634. 2017. | Abstract
- Oliveira Júnior, G.A., Perez, B.C., Cole, J.B., Santana, M.H.A., Silveira, J., Mazzoni, G., Ventura, R.V., Santana Júnior, M.L., Kadarmideen, H.N., Garrick, D.J., and Ferraz, J.B.S. Genomic study and Medical Subject Headings enrichment analysis
of early pregnancy rate and antral follicle numbers in Nelore heifers. J. Anim. Sci. 95(11):4796–4812. 2017. | Abstract
- Ortega, M.S., Denicol, A.C., Cole, J.B., Null, D.J., Taylor, J.F., Schnabel, R.D., and Hansen, P.J. Association of single nucleotide polymorphisms in candidate genes previously related to genetic variation in fertility with phenotypic measurements of reproductive function in Holstein cows. J. Dairy Sci. 100(5):3725–3734. 2017. | Abstract
- Ortega, M., Wohlgemuth, S., Tribulo, P., Siqueira, L.G.B., Null, D.J., Cole, J.B., Da Silva, M.V., and Hansen, P.J. A single nucleotide polymorphism in COQ9 affects mitochondrial and ovarian function and fertility in Holstein cows. Biol. Reprod. 96(3):652–663. 2017. | Abstract
- Parker Gaddis, K.L., Dikmen, S., Null, D.J., Cole, J.B., and Hansen, P.J. Evaluation of genetic components in traits related to superovulation, in vitro fertilization, and embryo transfer in Holstein cattle. J. Dairy Sci. 100(4):2877–2891. 2017. | Abstract
- Schwartz, J.C., Gibson, M.S., Heimeier, D., Koren, S., Phillippy, A.M., Bickhart, D.M., Smith, T.P.L., Medrano, J.F., and Hammond, J.A
The evolution of the natural killer complex; a comparison between mammals using new high-quality genome assemblies and targeted annotation. Immunogenetics 69:255–269. 2017. | Abstract
- Stafuzza, N.B., Zerlotini, A., Lobo, F.P., Yamagishi, M.E.B., Chud, T.C.S., Caetano, A.R., Munari, D.P., Garrick, D.J., Machado, M.A., Martins, M.F., Carvalho, M.R., Cole, J.B., and da Silva, M.V.G.B.
Single nucleotide variants and InDels
identified from whole-genome re-sequencing
of Guzerat, Gyr, Girolando and Holstein cattle
breeds. PLoS One 12(3):e0173954. | Abstract
2016
- Adams, H.A., Sonstegard, T.S., VanRaden, P.M., Null, D.J., Van Tassell, C.P., Larkin, D.M., and Lewin, H.A. Identification of a nonsense mutation in APAF1 that is likely causal for a decrease in reproductive efficiency in Holstein dairy cattle. J. Dairy Sci. 99(8):6693–6701. 2016. | Abstract
- Chesnais, J., Cooper, T.A., Wiggans, G.R., Sargolzaei, M., Pryce, J., and Miglior, F. Using genomics to enhance selection of novel traits in North American dairy cattle. J. Dairy Sci. 99(3):2413–2427. 2016. | Abstract
- Cooper, T.A., Eaglen, S.A.E., Wiggans, G.R., Jenko, J., Huson, H.J., Morrice, D.M., Bichard, M., de L. Luff, W.G., and Woolliams, J.A. Genomic evaluation, breed identification, and population structure of Guernsey cattle in North America, Great Britain, and the Isle of Guernsey. J. Dairy Sci. 99(7):5508–5515. 2016. | Abstract
- Garcia-Ruiz, A., Cole, J.B, VanRaden, P.M., Wiggans, G.R., Ruiz-López, F.J., and Van Tassell, C.P. Changes in genetic selection differentials and generation intervals in US Holstein dairy cattle as a result of genomic selection. Proc. Natl. Acad. Sci. 113(28):E3995–4004. 2016. | Abstract
- Petrini, J., Iung, L.H.S., Rodriguez, M.A.P., Salvian, M., Pertille, F., Rovadoscki, G.A., Cassoli, L.D., Coutinho, L.L., Machado, P.F., Wiggans, G.R., and Mourao, G.B. Genetic parameters for milk fatty acids, milk yield and quality traits of a Holstein cattle population reared under tropical conditions. J. Anim. Breeding Genet. 133(5):384–395. 2016. | Abstract
- Pryce, J.E., Parker Gaddis, K.L., Loeck, A., Bastin, C., Abdelsayed, M., Gengler, N., Miglior, F., Heringstad, B., Egger-Danner, C., Stock, K.F., Bradley, A.J., and Cole, J.B. Invited review: Opportunities for genetic improvement of metabolic diseases. J. Dairy Sci. 99(9):6856–6873. 2016. | Abstract
- Su, G., Ma, P., Nielsen, U.S., Aamand, G.P., Wiggans, G.R., Guldbrandtsen, B., and Lund, M.S. Sharing reference data and including cows in reference population improve genomic predictions in Danish Jersey. Anim. 10(6):1067–1075. 2016. | Abstract
- Utsunomiya, A.T.H., Santos, D.J.A., Boison, S.A., Utsunomiya, Y.T., Milanesi, M., Bickhart, D.M., Ajmone-Marsan, P., Solkner, J., Garcia, J.F., da Fonseca, R., and da Silva, M.V.G.B. Revealing misassembled segments in the bovine reference genome by high resolution linkage disequilibrium scan. BMC Genomics 17:705. 2016. | Abstract
- Wiggans, G.R., Cooper, T.A., VanRaden, P.M., Van Tassell, C.P., Bickhart, D.M., and Sonstegard, T.S. Increasing the number of single nucleotide polymorphisms used in genomic evaluation of dairy cattle. J. Dairy Sci. 99(6):4504–4511. 2016. | Abstract
- Wu, X-L., Xu, J., Feng, G., Wiggans, G.R., Taylor, J.F., He, J., Qian, C., Qiu, J., Simpson, B., Walter, J., and Bauck, S. Optimal design of low-density SNP arrays for genomic prediction: algorithm and applications. PLoS ONE. 11(9):e0161719. 2016. | Abstract
2015
- Bermejo-Alvarez, P., Ramos-Ibeas, P., Park, K.E., Powell, A.P., Vansandt, L., Bickhart, D.M., Ramirez, M.A., Gutierrez-Adan, A., and Telugu, B.P. Tet-mediated imprinting erasure in H19 locus following reprogramming of spermatogonial stem cells to induced pluripotent stem cells. Sci. Rpt. 5:13691. 2015. | Abstract
- Bickhart, D.M., Hutchison, J.L., Xu, L., Schnabel, R.D., Taylor, J.F., Reecy, J.M., Schroeder, S.G., Van Tassell, C.P., Sonstegard, T.S., and Liu, G. RAPTR-SV: a hybrid method for the detection of structural variants. Bioinformatics. 31(13):2084–2090. 2015. | Abstract
- Dikmen, S., Wang, X., Ortega, M., Null, D.J., Cole, J.B., Hansen, P.J. Single nucleotide polymorphisms associated with thermoregulation in lactating dairy cows exposed to heat stress. J. Anim. Breed. Genet. 132(6):409–419. 2015. | Abstract
- Egger-Danner, C., Cole, J.B., Pryce, J., Gengler, N., Heringstad, B., Stock, K., Bradley, A., and Andrews, L. Invited review: Overview of new traits and phenotyping strategies in dairy cattle with a focus on functional traits. Animal 9(2):191–207. 2015. | Abstract
- Ma, L., O’Connell, J.R., VanRaden, P.M., Shen, B., Padhi, A. Sun, C., Bickhart, D.M., Cole, J.B., Null, D.J., Liu, G.E., Da, Y., and Wiggans, G.R. Cattle sex-specific recombination and genetic control from a large pedigree analysis. PLoS Genet. 11(11):e1005387. 2015. | Abstract
- Macciotta, N.P.P., Dimauro, C., Null, D.J., Gaspa, G., Cellesi, M., and Cole, J.B. Dissection of genomic correlation matrices of US Holsteins using multivariate factor analysis. J. Anim. Breed. Genet. 132(1):9–20. 2015. | Abstract
- Wiggans, G.R., Su, G., Cooper, T.A., Nielsen, U.S., Aamand, G.P., Buldgrandtsen, B., Lund, M.S., and VanRaden, P.M. Short communication: Improving accuracy of Jersey genomic evaluations in the United States and Denmark by sharing reference population bulls. J. Dairy Sci. 98(5):3508–3513. 2015. | Abstract
- Zavarez, L.B., Utsunomiya, Y.T., Carmo, A.S., Neves, H.H.R., Carvalheiro, R., Ferencakovic, M., Perez O’Brien, A.M., Curik, I., Cole, J.B., Van Tassell, C.P., da Silva, M.V.G.B., Sonstegard, T.S., Sölkner, J., and Garcia, J.F. Assessment of autozygosity in Nellore cows (Bos indicus) through high-density SNP genotypes. Front. Genet. 6:5. 2015. | Abstract
2014
- Cooper, T.A., Wiggans, G.R., Null, D.J., Hutchison, J.L., and Cole,
J.B. Genomic evaluation, breed identification, and discovery of a haplotype affecting fertility for Ayrshire dairy cattle. J. Dairy
Sci. 97(6):3878–3882. 2014. | Abstract
- Gay, K.D., Widmar, N.J.O., Nennich. T.D., Schinckel, A.P., Cole, J.B., and Schutz, M.M. Development of a lifetime merit-based selection index for US dairy grazing systems. J. Dairy Sci. 97(7):4568–4578. 2014. | Abstract
- McClure, M.C., Bickhart, D., Null, D., VanRaden, P., Xu, L.,
Wiggans, G., Liu, G., Schroeder, S., Glasscock, J., Armstrong, J., Cole, J.B.,
Van Tassell, C.P., and Sonstegard, T.S.
Bovine exome
sequence analysis and targeted SNP genotyping of recessive fertility defects
BH1, HH2, and HH3 reveal a putative causative mutation in SMC2 for HH3.
PLoS ONE 9(3):e92769. 2014. | Abstract
- McDaneld, T.G., Kuehn, L.A., Thomas, M.G., Snelling, W.M., Smith, T.P.L., Pollak, E.J., Cole, J.B., and Keele, J.W. Genomewide association study of reproductive efficiency in female cattle. J. Anim. Sci. 92(5):1945–1957. 2014. | Abstract
- Neves, H.H.R., Carvalheiro, R., Perez O’Brien, A.M., Utsunomiya, Y.T., do Carmo, A.S., Schenkel, F.S., Solkner, J., McEwan, J.C., Van Tassell, C.P., Cole, J.B., da Silva, M.V.G.B., Queiroz, S.A., Sonstegard, T.S., and Garcia, J. F.
Accuracy of genomic predictions in Bos indicus (Nellore) cattle.
Genet. Sel. Evol. 46:17. 2014. | Abstract
- Silva, M.V.B., dos Santos, D.J.A., Boison, S.A., Utsunomiya, A.T.H., Carmo, S., Sonstegard, T.S., Cole, J.B., and Van Tassell, C.P. The development of genomics applied to dairy breeding. Livest. Sci. 166:66–75. 2014. | Abstract
- Utsunomiya, Y.T., Carmo, A.S., Neves, H.H.R., Carvalheiro, R., Matos, M.C., Zavarez, L.B., Ito, P.K.R.K., Perez O’Brien, A.M., Sölkner, J., Porto-Neto, L.R., Schenkel, F.S., McEwan, J., Cole, J.B., da Silva, M.V.G.B., Van Tassell, C.P., Sonstegard, T.S., and Garcia, J.F. Genome-wide mapping of loci explaining variance in scrotal circumference in Nellore cattle. PLoS ONE 9(2):e88561. 2014. | Abstract
- VanRaden, P.M., Tooker, M.E., Wright, J.R., Sun, C., and Hutchison, J.L. Comparison of single-trait to multi-trait national evaluations for yield, health, and fertility. J. Dairy Sci. 97(12):7952–7962. 2014. | Abstract
- Xu, L., Cole, J.B., Bickhart, D.M., Hou, Y., Song, J., VanRaden, P.M., Sonstegard, T.S., Van Tassell, C.P., and Liu, G.E. Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins. BMC Genomics 15:683. 2014. | Abstract
2013
- Cole, J.B., Lewis, R.M., Maltecca, C., Newman, S., Olson, K.M., and
Tait, Jr., R.G. Breeding and Genetics Symposium: Systems biology in animal
breeding: Identifying relationships among markers, genes, and phenotypes.
J. Anim. Sci. 91(2):521–522. 2013.
- Connor, E.E., Hutchison, J.L., Norman, H.D., Olson, K.M., Van
Tassell, C.P., Leith, J.M., and Baldwin VI, R.L.
Use of residual feed
intake in Holsteins during early lactation shows potential to improve feed
efficiency through genetic selection. J. Anim. Sci. 91(8):3978–3988.
2013. |
Abstract
- McClure, M., Kim, E., Bickhart, D., Null, D., Cooper, T., Cole, J.,
Wiggans, G., Ajmone-Marsan, P., Colli, L., Santus, E., Liu, G.E., Schroeder,
S., Matukumalli, L., Van Tassell, C., and Sonstegard T.
Fine mapping
for Weaver Syndrome in Brown Swiss cattle and the identification of 41
concordant mutations across NRCAM, PNPLA8 and CTTNBP2. PLoS One
8(3):e59251. 2013. | Abstract
- McClure, M.C., Sonstegard T.S., Wiggans, G.R., Van Eenennaam, A.L.,
Weber, K.L., Penedo, C.T., Berry, D.P., Flynn, J., Garcia, J.F., Carmo, A.S.,
Regitano, L.C.A., Albuquerque, M., Silva, M.V.G.B., Machado, M.A., Coffey, M.,
Moore, K., Boscher, M-Y., Genestout, L., Mazza, R., Taylor, J.F., Schnabel,
R.D., Simpson, B., Marques, E., McEwan, J.C., Cromie, A., Coutinho, L.L.,
Kuehn, L.A., Keele, J.W., Piper, E.K., Cook, J., Williams, R., Bovine HapMap
Consortium, and Van Tassell, C.P.
Imputation of
microsatellite alleles from dense SNP genotypes for parentage verification
across multiple Bos taurus and Bos indicus breeds. Front. Genet. 4:176.
2013. |
Abstract
- Misztal, I., Tsuruta, S., Aguilar, Legarra, A., VanRaden, P.M., and
Lawlor, T.J. Methods to
approximate reliabilities in single-step genomic evaluation. J. Dairy Sci.
96(1):647–654. 2013. |
Abstract
- Porto-Neto, L.R., Sonstegard, T.S., Liu, G.E., Bickhart, D.M., da Silva, M.V.B., Machado, M.M., Utsunomiya, Y.T., Garcia, J.F., Gondro, C., and Van Tassell, C.P. Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping. BMC Genomics 14:876. 2013.
- Sonstegard, T.S., Cole, J.B., VanRaden, P.M., Van Tassell, C.P.,
Null, D.J., Schroeder, S.G., Bickhart, D.M., and McClure, M.C.
Identification of a nonsense mutation in CWC15 associated with
decreased reproductive efficiency in Jersey cattle. PLoS ONE. 8(1):e54872.
2013. |
Abstract
- Utsunomiya, Y.T., do Carmo, A.S., Carvalheiro, R., Neves, H.H.R., Matos, M.C., Zavarez, L.B., Pérez O’Brien, A.M., Sölkner, J., McEwan, J.C., Cole, J.B., Van Tassell, C.P., Schenkel, F.S., da Silva, M.V.G.B., Porto Neto, L.R., Sonstegard, T.S., and Garcia, J.F. Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height. BMC Genet. 14:52. 2013. | Abstract
- VanRaden, P.M., Null, D.J., Sargolzaei, M., Wiggans, G.R., Tooker,
M.E., Cole, J.B., Sonstegard, T.S., Connor, E.E., Winters, M., van Kaam,
J.B.C.H.M., Valentini, A., Van Doormaal, B.J., Faust, M.A., and Doak, G.A.
Genomic imputation and evaluation
using high density Holstein genotypes. J. Dairy Sci. 96(1):668–678.
2013. |
Abstract
- Yao, C., Spurlock, D.M., Armentano, L., Page, C.D., VandeHaar, M.J., Bickhart, D.M., and Weigel, K.A. Random Forests approach for identifying additive and epistatic single nucleotide polymorphisms associated with residual feed intake in dairy cattle. J. Dairy Sci.
96(10):6716–6729. 2013. |
Abstract
2012
- Boichard, D., Chung, H., Dassonneville, R., David, X., Eggen, A.,
Fritz, S., Gietzen, K.J., Hayes, B.J., Lawley, C.T., Sonstegard, T.S., Van
Tassell, C.P., VanRaden, P.M., Viaud-Martinez, K.A., and Wiggans, G.R.
Design of a
bovine low-density SNP array optimized for imputation. PLoS ONE
7(3):e34130. 2012. |
Abstract |
Supporting information
- García-Peniche, T.B., Montaldo, H.H., Valencia-Posadas, M.,
Wiggans, G.R., Hubbard, S.M., Torres-Vázquez, J.A., and Shepard, L.
Breed differences over time and
heritability estimates for production and reproduction traits of dairy goats in
the United States. J. Dairy Sci. 95(5):2707–2717. 2012. |
Abstract
- Hou, Y., Bickhart, D.M., Hvinden, M.L., Li, C., Song, J., Boichard,
D.A., Fritz, S., Eggen, A., DeNise, S., Wiggans, G.R., Sonstegard, T.S., Van
Tassell, C.P., and Liu, G.E.
Fine mapping of copy number variations on two cattle genomes
assembles using high density SNP array. BMC Genomics 13:376. |
Abstract
- Ma, L., Wiggans, G.R., Wang, S., Sonstegard, T.S., Yang, J.,
Crooker, B.A., Cole, J.B., Van Tassell, C.P., Lawlor, T.J., and Da, Y.
Effect of sample stratification on dairy GWAS results. BMC
Genomics 13:536. 2012. |
Abstract
2011
- Cole, J.B., Wiggans, G.R., Ma, L., Sonstegard, T.S., Lawlor, T.J.,
Crooker, B.A., Van Tassell, C.P., Yang, J., Wang, S., Matukumalli, L.K., and
Da, Y.
Genome-wide association analysis of thirty one production,
health, reproduction and body conformation traits in contemporary U.S. Holstein
cows. BMC Genomics 12:408. 2011 |
Abstract
- Hou, Y., Liu, G.E., Bickhart, D.M., Cardone, M., Wang, K., Kim,
E.-S., Matukumalli, L.K., Ventura, M., Song, J., VanRaden, P.M., Sonstegard,
T.S., and Van Tassell, C.P.
Genomic characteristics of cattle copy number variations.
BMC Genomics 12:127. 2011. |
Abstract
- Norman, H.D., Lombard, J.E., Wright, J.R., Kopral, C.A., Rodriquez,
J.M., and Miller, R.H. Consequence of alternative standards for bulk tank somatic cell
count of dairy herds in the United States. J. Dairy Sci.
94(12):6243–6256. 2011. |
Abstract
- VanRaden, P.M., Olson, K.M., Wiggans, G.R., Cole, J.B., and Tooker,
M.E. Genomic inbreeding and
relationships among Holsteins, Jerseys, and Brown Swiss . J. Dairy Sci.
94(11):5673–5680. 2011. |
Abstract
2010
- Wiggans, G.R., VanRaden, P.M., Bacheller, L.R., Tooker, M.E.,
Hutchison, J.L., Cooper, T.A., and Sonstegard, T.S.
Selection and management of DNA
markers for use in genomic evaluation. J. Dairy Sci. 93(5):2287–2292.
2010. |
Abstract
2009
- Cole, J.B., VanRaden, P.M., O’Connell, J.R., Van Tassell, C.P.,
Sonstegard, T.S., Schnabel, R.D., Taylor, J.F., and Wiggans, G.R.
Distribution and location of
genetic effects for dairy traits. J. Dairy Sci. 92(6):2931–2946.
2009. | Abstract |
Erratum
- Norman, H.D., Wright, J.R., Kuhn, M.T., Hubbard, S.M., Cole, J.B.,
and VanRaden, P.M. Genetic and
environmental factors that affect gestation length in dairy cattle. J.
Dairy Sci. 92(5):2259–2269. 2009. |
Abstract
- VanRaden, P.M., Van Tassell, C.P., Wiggans, G.R., Sonstegard, T.S.,
Schnabel, R.D., Taylor, J.F., and Schenkel, F.S.
Invited review: Reliability
of genomic predictions for North American Holstein bulls. J. Dairy Sci.
92(1):16–24. 2009. |
Abstract
- Wiggans, G.R., Sonstegard, T.S., VanRaden, P.M., Matukumalli, L.K.,
Schnabel, R.D., Taylor, J.F., Schenkel, F.S., and Van Tassell, C.P.
Selection of single-nucleotide
polymorphisms and quality of genotypes used in genomic evaluation of dairy
cattle in the United States and Canada. J. Dairy Sci.
92(7):3431–3436. 2009. |
Abstract
2008
2007
- Norman, H.D., Wright, J.R., Powell, R.L., VanRaden, P.M., Miglior,
F., and de Jong, G. Consistency
of maturity rate for milk yield across countries and generations. J. Dairy
Sci. 90(8):3937–3944. 2007. |
Abstract
- Paape, M.J., Wiggans, G.R., Bannerman, D.D., Thomas, D.L., Sanders,
A.H., Contreras, A., Moroni, P., and Miller, R.H.
Monitoring goat and sheep
milk somatic cell counts. Small Rumin. Res. 68:114–125. 2007.
|
Abstract
2006
2005
- Cole, J.B., Goodling, Jr., R.C., Wiggans, G.R., and VanRaden, P.M.
Genetic evaluation of calving
ease for Brown Swiss, Jersey, and Holstein bulls from purebred and crossbred
calvings. J. Dairy Sci. 88(4):1529–1539. 2005. |
Abstract
2004
- Ashwell, M.S., Heyen, D.W., Sonstegard, T.S., Van Tassell, C.P.,
Da, Y., VanRaden, P.M., Ron, M., Weller, J.I., and Lewin, H.A.
Detection of quantitative trait
loci affecting milk production, health, and reproductive traits in Holstein
cattle. J. Dairy Sci. 87(2):468–475. 2004. |
Abstract
- Salisbury, M.W., Krehbiel, C.R., Ross, T.T., Schultz, C.L., and
Melton, L.L.
Effects of supplemental protein type on intake, nitrogen
balance, and site, and extent of digestion in whiteface wethers consuming
low-quality grass hay. J. Anim. Sci. 82:(12):3567–3576. 2004.
| Abstract
- VanRaden, P.M., Sanders, A.H., Tooker, M.E., Miller, R.H., Norman,
H.D., Kuhn, M.T., and Wiggans, G.R.
Development of a national
genetic evaluation for cow fertility. J. Dairy Sci. 87(7):2285–2292.
2004. | Abstract
2003
- Montaldo, H.H., Keown, J.F., Van Vleck, L.D., and Van Tassell,
C.P.
Economic evaluation of Holstein sire selection strategies for
herd in Italy, Mexico, The Netherlands, and the United States using stochastic
simulation
[Evaluación económica de estrategias de
selección de sementales Holstein para hatos en Italia, México,
Holanda y Estados Unidos utilizando simulación estocástica].
Vet. Méx. 34(2):179–201. 2003.
- Zhu, J.J., Lillehoj, H.S., Allen, P.C., Van Tassell, C.P.,
Sonstegard, T.S., Cheng, H.H., Pollock, D., Sadjadi, M., Min, W., and Emara,
M.G. Mapping quantitative trait loci associated with resistance to
coccidiosis and growth. Poult. Sci. 82(1):9–16. 2003. |
Abstract
- Zhu, Y.L, Song, Q.J., Hyten, D.L., Van Tassell, C.P., Matukumalli,
L.K., Grimm, D.R., Hyatt, S.M., Fickus, E.W., Young, N.D., and Cregan, P.B.
Single-nucleotide
polymorphisms in soybean. Genetics 163(3):1123–1134. 2003.
| Abstract
2002
- Bormann, J., Wiggans, G.R., Philpot, J.C., Druet, T., and Gengler,
N. Estimating effects of
permanent environment, lactation stage, age, and pregnancy on test-day
yield. J. Dairy Sci. 85(Jan). Online. 2002. |
Abstract
- Sonstegard, T.S., Capuco, A.V., White, J., Van Tassell, C.P.,
Connor, E.E., Cho, J., Sultana, R., Shade, L., Wray, J.E., Wells, K.D., and
Quackenbush, J. Analysis of bovine mammary gland EST and functional annotation
of the Bos taurus gene index. Mamm. Genome 13(7):373–379. 2002.
| Abstract
- Wiggans, G.R., VanRaden, P.M., Bormann, J., Philpot, J.C., Druet,
T., and Gengler, N. Deriving
lactation yields from test-day yields adjusted for lactation stage, age,
pregnancy, and herd test date. J. Dairy Sci. 85(Jan). Online. 2002.
| Abstract
2001
- Capuco, A.V., Wood, D.L., Elsasser, T.H., Kahl, S., Erdman, R.A.,
Van Tassell, C.P., Lefcourt, A., and Piperova, L.S.
Effect of somatotropin on
thyroid hormones and cytokines in lactating dairy cows during ad libitum and
restricted feed intake. J. Dairy Sci. 84(11):2430–2439. 2001.
| Abstract
- Sonstegard, T.S., Barendse, C., Bennett, G.L., Brockmann, G.A.,
Davis, S., Droegemuller, C., Kalm, E., Kappes, S.M., Kuehn, C., Li, Y.,
Schwerin, M., Taylor, J., Thomsen, H., Van Tassell, C.P., and Yeh, C.C.
Consensus and
comprehensive linkage maps of the bovine sex chromosomes. Anim. Genet.
32(2):115–117. 2001. |
Abstract
- Sonstegard, T.S., Bendixen, C., Bennett, G.L., Kalm, E., Kappes,
S.M., Lewin, H.A., Lien, S., Nielsen, V.H., Olsaker, I., Schmutz, S., Thomsen,
H., Van Tassell, C.P., and Xu, N.
Consensus and
comprehensive linkage maps of bovine chromosome 17. Anim. Genet.
32(2):112–113. 2001. |
Abstract
- Sonstegard, T.S., Bennett, G.L., Kalm, E., Kappes, S.M., Lewin,
H.A., Olsaker, I., Schmutz, S., Thomsen, H., Vage, D.I., Van Tassell, C.P., and
Xu, N. Consensus and
comprehensive linkage maps of bovine chromosome 25. Anim. Genet.
32(2):114–115. 2001. |
Abstract
2000
1999
- Da, Y., VanRaden, P.M., Ron, M., Beever, J.E., Paszek, A.A., Song,
J., Wiggans, G.R., Ma, R., Weller, J.I., and Lewin, H.A.
Standardization and
conversion of marker polymorphism measures. Anim. Biotech.
10(1&2):25–35. 1999.
- Heyen, D.W., Weller, J.I., Ron, M., Band, M. Beever, J.E.,
Feldmesser, E., Da, Y., Wiggans, G.R., VanRaden, P.M., and Lewin, H.A.
A
genome scan for QTL influencing milk production and health traits in dairy
cattle. Physiol. Genomics 1:165–175. 1999. |
Abstract
- Melvin, E.J., Lindsey, B.R., Quintal-Franco, J., Zanella, E.,
Fike, K.E., Van Tassell, C.P., and Kinder, J.E.
Circulating concentrations of estradiol, luteinizing hormone,
and follicle-stimulating hormone during waves of ovarian follicular development
in prepubertal cattle. Biol. Reprod. 60:405–415. 1999. |
Abstract
1998
- Ashwell, M.S., Da, Y., VanRaden, P.M., Rexroad, Jr., C.E., and
Miller, R.H. Detection of
putative loci affecting conformational type traits in an elite population of
United States Holsteins using microsatellite markers. J. Dairy Sci.
81(4):1120–1125. 1998. |
Abstract
- Ashwell, M.S., Da, Y., Van Tassell, C.P., VanRaden, P.M., Miller,
R.H., and Rexroad, C.E., Jr. Detection of putative loci affecting milk production and
composition, health, and type traits in a United States Holstein
population. J. Dairy Sci. 81(12):3309–3314. 1998. |
Abstract
- Misztal, I., Varona, L., Culbertson, M., Bertrand, J.K., Mabry,
J., Lawlor, T.J., Van Tassell, C.P., and Gengler, N.
Studies on the value of
incorporating the effect of dominance in genetic evaluations of dairy cattle,
beef cattle and swine. Biotechnol. Agron. Soc. Environ. 2(4):227–233.
1998.
1997
- Ashwell, M.S., Rexroad, Jr., C.E., Miller, R.H., VanRaden, P.M.,
and Da, Y.
Detection
of loci affecting milk production and health traits in an elite US Holstein
population using microsatellite markers. Anim. Genet. 28(3):216–222.
1997. |
Abstract
1996
1995
- Dimov, G., Albuquerque, L.G., Keown, J.F., Van Vleck, L.D., and
Norman, H.D. Variance of
interaction effects of sire and herd for yield traits of Holsteins in
California, New York, and Pennsylvania with an animal model. J. Dairy Sci.
78(4):939–946. 1995. |
Abstract
1994
1993
1992
1991
1990
Selected earlier
articles
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